I have the head over at Lynn Roger's workshop, they are checking it for me. (it turns out its sweet BTW

While doing this, they noted that it has had a rather extensive port and polish job done to the head, presumably while in japan. I thought this was a good thing, until I read Redmists comments about porting in the thread in the FAQ.
I mean the redtop makes peak torque at 6000rpm or so already, why would they do this? I would imagine the porting would already be 'tuned' to flow efficiently at high RPM anyway.
It seems weird that they would do all of this work, when the engine is relatively stock apart from that. Could it possibly be a factory porting job?
I have been told that this will effect the volumetric efficiency of the engine, which I understand. However I have been told that this could possibly mean that the factory ECU will not be able to cope.
Has anyone else had experience running a ported head, on the standard ECU? I know it will vary from ECU to ECU, and engine to engine. I just want a general idea.
I thought that since the car runs an AFM, it would just sense that more, or less air was entering the engine, and alter the fuel ratios to suit?
Also I thought that some ECU's have a limited ability to 'learn', and generate revised fuel maps to suit the fuel that was used, etc. Like I hear that the altezza boys have problems with the clever ECU overriding, or 'tuning out' their aftermarket fuel management computers.
Well thats what I read on one of the altezza forums, anyway.

Regards,
RomanV