I wouldn't bother.
What are you really after? a fun RWD car? I've been in a couple of 1S ronas.. they go hard! a 4AGE, unless its had big money spent on it, wouldn't give much more gain. I would sell everything, save some money, and buy something with the motor already in it.
But I spose, if you really love the car, and have the spare time and money, anything is doable. It sounds like you've got everything you need, I would personally stick with stock EFi, carbs are hard to tune, but sound great. Have you checked the gbox mount? is the K50/T50 one different?
I'm pretty sure, as the MR2 4age is basically the same as FWD.. you'd need a rwd manifold and waterpump/lines? And is the 1S gbox cable or hydro clutch? Say, $200 for a manifold, $200 for the waterpump and piping, $300 to replace the rooted bearings, another $200 to freshen the motor up (cambelt, plugs, gaskets etc.) bits and pieces to wire it up $100.
And thats your $1000 gone. $50 gearbox mount fabrication, $100 for driveshaft setup, $150 for donor brakes off another car, $50 for new pads and freshen up.. maybe another $150 to get the hydro clutch setup.. and now, you have a runner. You go for a phat down the road, get pulled up by a bastard cop.. no cert! Add $350. (and the $200 for driving an unwarrantable car!
) And then, 2 weeks later, you blow your diff. Add $50. So far, we're up to an estimated $2100 on a car that you could only ever sell for $1500, on a good day. I know, cos I've made this mistake FAR too many times, and have lost a LOT of $$ that I could've spent on something that had it all in the first place!
Anyway, hope this helps.
Daily driver: Toyota RunX/Toyota Caldina
Ex: 2x AE101, 5x KP60, KP61, EP71, 3x KE70, KE72, AE70, AE82, 2x TE71, AE90, AE92, ST170, plus 11 Hondas, 12 Nissans, 6 Fords, 4 Mazdas, 3 Mitsis, an Isuzu and a Lada!